Escherichia coli (GCA_000731455) Assembly and Gene Annotation

Escherichia coli (GCA_000731455)

Organism

European Nucleotide Archive Records

• CCCP010000001.1
• CCCP010000002.1
• CCCP010000003.1
• CCCP010000004.1
• CCCP010000005.1
• CCCP010000006.1
• CCCP010000007.1
• CCCP010000008.1
• CCCP010000009.1
• CCCP010000010.1
• CCCP010000011.1
• CCCP010000012.1
• CCCP010000013.1
• CCCP010000014.1
• CCCP010000015.1
• CCCP010000016.1
• CCCP010000017.1
• CCCP010000018.1
• CCCP010000019.1
• CCCP010000020.1
• CCCP010000021.1
• CCCP010000022.1
• CCCP010000023.1
• CCCP010000024.1
• CCCP010000025.1
• CCCP010000026.1
• CCCP010000027.1
• CCCP010000028.1
• CCCP010000029.1
• CCCP010000030.1
• CCCP010000031.1
• CCCP010000032.1
• CCCP010000033.1
• CCCP010000034.1
• CCCP010000035.1
• CCCP010000036.1
• CCCP010000037.1
• CCCP010000038.1
• CCCP010000039.1
• CCCP010000040.1
• CCCP010000041.1
• CCCP010000042.1
• CCCP010000043.1
• CCCP010000044.1
• CCCP010000045.1
• CCCP010000046.1
• CCCP010000047.1
• CCCP010000048.1
• CCCP010000049.1
• CCCP010000050.1
• CCCP010000051.1
• CCCP010000052.1

Ensembl Genomes API Example

This example Perl script shows how to create a database adaptor for this species. For more information see the Ensembl Bacteria documentation.

#!/usr/bin/env perl                                                                                                                                                                                                                         
use strict;                                                                                                                                                                                                                                 
use warnings;                                                                                                                                                                                                                               
                                                                                                                                                                                                                                              
use Bio::EnsEMBL::LookUp;                                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# load the lookup from the main Ensembl Bacteria public server                                                                                                                                                                              
my $lookup = Bio::EnsEMBL::LookUp->new();                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# find the correct database adaptor using a unique name                                                                                                                                                                                     
my $dba = $lookup->get_by_name_exact(                                                                                                                                                                                                       
  'escherichia_coli_gca_000731455');
 
# now work with the database adaptor as for any Ensembl database