Escherichia coli (GCA_000731455) Assembly and Gene Annotation

Escherichia coli (GCA_000731455)

Organism

Taxonomy ID562
NameEscherichia coli (GCA_000731455)
 Wikipedia
Aliases
  • Escherichia coli (GCA_000731455)
  • Escherichia coli str. D6-117.07 str. D6-117_07.11
Classification
  • root
  • cellular organisms
  • Bacteria
  • Proteobacteria
  • Gammaproteobacteria
  • Enterobacterales
  • Enterobacteriaceae
  • Escherichia
  • Escherichia coli

European Nucleotide Archive Records

Ensembl Genomes API Example

This example Perl script shows how to create a database adaptor for this species. For more information see the Ensembl Bacteria documentation.

#!/usr/bin/env perl                                                                                                                                                                                                                         
use strict;                                                                                                                                                                                                                                 
use warnings;                                                                                                                                                                                                                               
                                                                                                                                                                                                                                              
use Bio::EnsEMBL::LookUp;                                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# load the lookup from the main Ensembl Bacteria public server                                                                                                                                                                              
my $lookup = Bio::EnsEMBL::LookUp->new();                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# find the correct database adaptor using a unique name                                                                                                                                                                                     
my $dba = $lookup->get_by_name_exact(                                                                                                                                                                                                       
  'escherichia_coli_gca_000731455');
 
# now work with the database adaptor as for any Ensembl database

Statistics

Summary

AssemblyV1, INSDC Assembly GCA_000731455.1, Sep 2015
Database version88.1
Base Pairs4,787,382
Golden Path Length4,795,662
Genebuild byENA
Genebuild methodGenerated from ENA annotation
Data sourceEuropean Nucleotide Archive

Gene counts

Coding genes4,557
Non coding genes73
Small non coding genes73
Gene transcripts4,630

About this species