Listeria ivanovii WSLC3009 Assembly and Gene Annotation

Listeria ivanovii WSLC3009

Organism

Taxonomy ID1457190
NameListeria ivanovii WSLC3009
 Wikipedia
Classification
  • root
  • cellular organisms
  • Bacteria
  • Terrabacteria group
  • Firmicutes
  • Bacilli
  • Bacillales
  • Listeriaceae
  • Listeria
  • Listeria ivanovii
  • Listeria ivanovii WSLC3009

European Nucleotide Archive Records

References

Ensembl Genomes API Example

This example Perl script shows how to create a database adaptor for this species. For more information see the Ensembl Bacteria documentation.

#!/usr/bin/env perl                                                                                                                                                                                                                         
use strict;                                                                                                                                                                                                                                 
use warnings;                                                                                                                                                                                                                               
                                                                                                                                                                                                                                              
use Bio::EnsEMBL::LookUp;                                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# load the lookup from the main Ensembl Bacteria public server                                                                                                                                                                              
my $lookup = Bio::EnsEMBL::LookUp->new();                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# find the correct database adaptor using a unique name                                                                                                                                                                                     
my $dba = $lookup->get_by_name_exact(                                                                                                                                                                                                       
  'listeria_ivanovii_wslc3009');
 
# now work with the database adaptor as for any Ensembl database

Statistics

Summary

AssemblyASM56515v1, INSDC Assembly GCA_000565155.1, May 2014
Database version91.1
Base Pairs2,919,538
Golden Path Length2,919,538
Genebuild byENA
Genebuild methodGenerated from ENA annotation
Data sourceEuropean Nucleotide Archive

Gene counts

Coding genes2,773
Non coding genes86
Small non coding genes86
Gene transcripts2,859

About this species