Mycobacterium tuberculosis (GCA_001383375) Assembly and Gene Annotation

Mycobacterium tuberculosis (GCA_001383375)


Taxonomy ID1773
NameMycobacterium tuberculosis (GCA_001383375)
  • Mycobacterium tuberculosis (GCA_001383375)
  • Mycobacterium tuberculosis str. 1128C
  • root
  • cellular organisms
  • Bacteria
  • Terrabacteria group
  • Actinobacteria
  • Corynebacteriales
  • Mycobacteriaceae
  • Mycobacterium
  • Mycobacterium tuberculosis complex
  • Mycobacterium tuberculosis

European Nucleotide Archive Records

Ensembl Genomes API Example

This example Perl script shows how to create a database adaptor for this species. For more information see the Ensembl Bacteria documentation.

#!/usr/bin/env perl                                                                                                                                                                                                                         
use strict;                                                                                                                                                                                                                                 
use warnings;                                                                                                                                                                                                                               
use Bio::EnsEMBL::LookUp;                                                                                                                                                                                                                   
# load the lookup from the main Ensembl Bacteria public server                                                                                                                                                                              
my $lookup = Bio::EnsEMBL::LookUp->new();                                                                                                                                                                                                   
# find the correct database adaptor using a unique name                                                                                                                                                                                     
my $dba = $lookup->get_by_name_exact(                                                                                                                                                                                                       
# now work with the database adaptor as for any Ensembl database



Assembly7156_7#76, INSDC Assembly GCA_001383375.1, Jun 2015
Database version91.1
Base Pairs4,363,515
Golden Path Length4,363,515
Genebuild byENA
Genebuild methodGenerated from ENA annotation
Data sourceEuropean Nucleotide Archive

Gene counts

Coding genes4,037
Non coding genes56
Small non coding genes56
Gene transcripts4,093

About this species