Mycobacterium tuberculosis H37Rv Assembly and Gene Annotation

Mycobacterium tuberculosis H37Rv

Organism

Taxonomy ID83332
NameMycobacterium tuberculosis H37Rv
 Wikipedia
Classification
  • root
  • cellular organisms
  • Bacteria
  • Terrabacteria group
  • Actinobacteria
  • Corynebacteriales
  • Mycobacteriaceae
  • Mycobacterium
  • Mycobacterium tuberculosis complex
  • Mycobacterium tuberculosis
  • Mycobacterium tuberculosis H37Rv

European Nucleotide Archive Records

References

  1. TubercuList--10 years after. Lew J.M., Kapopoulou A., Jones L.M., Cole S.T. - Tuberculosis (Edinb) 2011, 91(1):1-7 PubMed: 20980199

Ensembl Genomes API Example

This example Perl script shows how to create a database adaptor for this species. For more information see the Ensembl Bacteria documentation.

#!/usr/bin/env perl                                                                                                                                                                                                                         
use strict;                                                                                                                                                                                                                                 
use warnings;                                                                                                                                                                                                                               
                                                                                                                                                                                                                                              
use Bio::EnsEMBL::LookUp;                                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# load the lookup from the main Ensembl Bacteria public server                                                                                                                                                                              
my $lookup = Bio::EnsEMBL::LookUp->new();                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# find the correct database adaptor using a unique name                                                                                                                                                                                     
my $dba = $lookup->get_by_name_exact(                                                                                                                                                                                                       
  'mycobacterium_tuberculosis_h37rv');
 
# now work with the database adaptor as for any Ensembl database

Statistics

Summary

AssemblyASM19595v2, INSDC Assembly GCA_000195955.2, Feb 2015
Database version90.1
Base Pairs4,411,532
Golden Path Length4,411,532
Genebuild byENA
Genebuild methodGenerated from ENA annotation
Data sourceEuropean Nucleotide Archive

Gene counts

Coding genes4,018
Non coding genes78
Small non coding genes78
Pseudogenes13
Gene transcripts4,109

About this species