Rhodobacter sphaeroides KD131 Assembly and Gene Annotation

Rhodobacter sphaeroides KD131

Organism

Taxonomy ID557760
NameRhodobacter sphaeroides KD131
 Wikipedia
Aliases
  • Rhodobacter sphaeroides KD131 str. KD131; KCTC 12085
  • Rhodobacter sphaeroides str. KD131
  • Rhodobacter sphaeroides strain KD131
Classification
  • root
  • cellular organisms
  • Bacteria
  • Proteobacteria
  • Alphaproteobacteria
  • Rhodobacterales
  • Rhodobacteraceae
  • Rhodobacter
  • Rhodobacter sphaeroides
  • Rhodobacter sphaeroides KD131

European Nucleotide Archive Records

References

  1. Complete genome sequence of Rhodobacter sphaeroides KD131. Lim S.K., Kim S.J., Cha S.H., Oh Y.K., Rhee H.J., Kim M.S., Lee J.K. - J. Bacteriol. 2009, 191(3):1118-9 PubMed: 19028901

Ensembl Genomes API Example

This example Perl script shows how to create a database adaptor for this species. For more information see the Ensembl Bacteria documentation.

#!/usr/bin/env perl                                                                                                                                                                                                                         
use strict;                                                                                                                                                                                                                                 
use warnings;                                                                                                                                                                                                                               
                                                                                                                                                                                                                                              
use Bio::EnsEMBL::LookUp;                                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# load the lookup from the main Ensembl Bacteria public server                                                                                                                                                                              
my $lookup = Bio::EnsEMBL::LookUp->new();                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# find the correct database adaptor using a unique name                                                                                                                                                                                     
my $dba = $lookup->get_by_name_exact(                                                                                                                                                                                                       
  'rhodobacter_sphaeroides_kd131');
 
# now work with the database adaptor as for any Ensembl database

Statistics

Summary

AssemblyASM2100v1, INSDC Assembly GCA_000021005.1, May 2014
Database version90.1
Base Pairs4,711,139
Golden Path Length4,711,139
Genebuild byENA
Genebuild methodGenerated from ENA annotation
Data sourceEuropean Nucleotide Archive

Gene counts

Coding genes4,569
Non coding genes142
Small non coding genes142
Gene transcripts4,711

About this species