Staphylococcus aureus subsp. aureus USA300_TCH1516 Assembly and Gene Annotation

Staphylococcus aureus subsp. aureus USA300_TCH1516

Organism

Taxonomy ID451516
NameStaphylococcus aureus subsp. aureus USA300_TCH1516
 Wikipedia
Aliases
  • Staphylococcus aureus subsp. aureus USA300-HOU-MR
  • Staphylococcus aureus subsp. aureus str. USA300_TCH1516
  • Staphylococcus aureus subsp. aureus strain USA300_TCH1516
Classification
  • root
  • cellular organisms
  • Bacteria
  • Terrabacteria group
  • Firmicutes
  • Bacilli
  • Bacillales
  • Staphylococcaceae
  • Staphylococcus
  • Staphylococcus aureus
  • Staphylococcus aureus subsp. aureus
  • Staphylococcus aureus subsp. aureus USA300
  • Staphylococcus aureus subsp. aureus USA300_TCH1516

European Nucleotide Archive Records

References

Ensembl Genomes API Example

This example Perl script shows how to create a database adaptor for this species. For more information see the Ensembl Bacteria documentation.

#!/usr/bin/env perl                                                                                                                                                                                                                         
use strict;                                                                                                                                                                                                                                 
use warnings;                                                                                                                                                                                                                               
                                                                                                                                                                                                                                              
use Bio::EnsEMBL::LookUp;                                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# load the lookup from the main Ensembl Bacteria public server                                                                                                                                                                              
my $lookup = Bio::EnsEMBL::LookUp->new();                                                                                                                                                                                                   
                                                                                                                                                                                                                                              
# find the correct database adaptor using a unique name                                                                                                                                                                                     
my $dba = $lookup->get_by_name_exact(                                                                                                                                                                                                       
  'staphylococcus_aureus_subsp_aureus_usa300_tch1516');
 
# now work with the database adaptor as for any Ensembl database

Statistics

Summary

AssemblyASM1708v1, INSDC Assembly GCA_000017085.1, May 2014
Database version90.1
Base Pairs2,903,081
Golden Path Length2,903,081
Genebuild byENA
Genebuild methodGenerated from ENA annotation
Data sourceEuropean Nucleotide Archive

Gene counts

Coding genes2,689
Non coding genes206
Small non coding genes199
Long non coding genes7
Pseudogenes1
Gene transcripts2,896

About this species