We need your help! Has Ensembl saved you time or effort? Please take 15 minutes to fill in a survey and help EMBL-EBI make the case for why open data resources are critical to life science research.
https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]

Ensembl Genomes HomeEnsembl Bacteria HomeEnsembl Bacteria Home ▼
More ▼
Search »

Search for a gene

e.g. ftsZ or uridine*

Search for a genome

e.g. type esc to find Escherichia

What's New in Release 61

Did you know...?

Ensembl Genomes REST Service

To access Ensembl Genomes data from any programming language, try our REST service. For full documentation, including examples from a wide range of languages, visit http://rest.ensembl.org

In June 2023, Ensembl Bacteria released new gene predictions for almost all of the genomes it hosts. This was done in collaboration with the EMBL-EBI metagenomics team and utlised a pipeline using Prokka, combined with results from cmscan, EggNOG and InterProScan. We have retained the community-submitted annotation for 115 species that are in our pan-taxonomic comparative analysis.

  • Genomes

  • Data

    • Updated annotation of molecular interactions involving bacterial genes
    • Updated protein features for all species using InterProScan
    • Updated pan-taxonomic compara (which includes key bacterial species)

Ensembl Rapid Release

New genome assemblies are now being released to the Ensembl Beta site .

All Rapid Release data, including release 65, has been uploaded into the new Ensembl Beta site.

The Ensembl Rapid Release website will remain active for the foreseeable future, however, the data and species set will no longer be updated.

Find out more on our blog

Archive sites

The following archive sites are available to access previous versions of data: - Release 59, May 2024 eg59-bacteria.ensembl.org - Release 56, February 2023 eg56-bacteria.ensembl.org - Release 52, December 2021 eg52-bacteria.ensembl.org - Release 49, December 2020 eg49-bacteria.ensembl.org - Release 45, September 2019 eg45-bacteria.ensembl.org

Ensembl Bacteria

Ensembl Bacteria is a browser for bacterial and archaeal genomes. The assemblies for these are taken from the databases of the International Nucleotide Sequence Database Collaboration, the European Nucleotide Archive at the EBI, GenBank at the NCBI, and the DNA Database of Japan).

Data access

Data can be visualised through the Ensembl genome browser and accessed programmatically via our Perl and RESTful APIs. Data is also accessible through public MySQL databases and our FTP site containing full data dumps in FASTA, EMBL, GTF, GFF3, JSON and RDF formats. A selection of over 100 key bacterial genomes have been included in the pan-taxonomic compara, and genes from all genomes have been classified into families using HAMAP and PANTHER more details.

Ensembl Genomes is developed by EMBL-EBI and is powered by the Ensembl software system for the analysis and visualisation of genomic data. For details of our funding please click here.

EMBL-EBI logo Ensembl logo Global Bio Data logo Elixir Logo